Unlike Amazon or Etsy, Shopify does not take a percentage cut of your retail price as a marketplace referral fee. Instead, you pay a flat monthly software subscription plus credit card processing rates:
| Shopify Plan |
Monthly Cost (Annual Billing) |
Online Credit Card Processing |
Third-Party Gateway Penalty |
| Shopify Basic |
$29 / mo ($39 monthly) |
2.9% + $0.30 |
2.0% additional fee |
| Standard Shopify |
$79 / mo ($105 monthly) |
2.7% + $0.30 |
1.0% additional fee |
| Advanced Shopify |
$299 / mo ($399 monthly) |
2.5% + $0.30 |
0.5% additional fee |
| Shopify Plus |
$2,300 / mo base |
Negotiated (~2.15% + $0.30) |
0.20% additional fee |
How is Shopify profit margin calculated?
Shopify Net Profit Margin % = ((Total Revenue - COGS - Shipping Cost - Ad Spend - Payment Processing Fees) / Total Revenue) * 100.
What are the official Shopify payment processing fees in 2026?
Using Shopify Payments in the US: Basic plan charges 2.9% + $0.30 per transaction; the standard Shopify plan charges 2.7% + $0.30; and the Advanced plan charges 2.5% + $0.30. In-person point-of-sale rates start at 2.6% + $0.10.
What is a healthy profit margin for a Shopify store?
A healthy e-commerce net margin on Shopify is typically between 15% and 25%. Dropshipping stores average 10-15%, while proprietary private label and custom manufactured goods average 25-45% net profit margin.
What is the penalty for not using Shopify Payments?
If you process credit cards through an external gateway like PayPal, Stripe, or Authorize.net instead of Shopify Payments, Shopify levies an additional transaction fee penalty: 2.0% on Basic, 1.0% on Shopify, and 0.5% on Advanced.